uScope Navigator (Deep Zoom)

Adjusting Objective Image for Best Flat Field
uScope Navigator (Deep Zoom)

Information in this article applies to:

  • uScope Navigator V4.0 and Later

Article ID: NDZ1126 — Created: 2 Jan 2018 — Reviewed: 26 Feb 2018


Flat-field correction is an image processing technique that improves digital image quality by removing artifacts and distortions. It compensates for different illuminator levels across the field of view of the camera. An image that has been flat-fielded will exhibit a uniform look (a flat-field).

Without flat field correction, it is easy to see the individual fields in a large, stitched image. The individual fields, where stitched, may differ by only a few pixel values. But, the human eye can easily discern the minuscule differences.

The problems and solutions described here apply to large stitched images.


Small discrepancies in the illuminator light source cause image fields to vignette. This effect is most apparent in white (empty) fields. While the pixel value at the edges is only a few counts different than values from the center of the field, the effect is quite pronounced in the final, stitched image. Proper, perfect flat field correction eliminates this effect. However, this is sometimes difficult to attain.

A number of things contribute to poor flat field correction:

  • Illumination Level
    The flat field image is captured, in air, at an illumination level of 35. Most glass slides attenuate the light from the illuminator by a few counts. Increasing the illuminator to a level of 40-45 sometimes helps alleviate the problem.
  • Dirty Objective
    While highly unlikely, we have found a few cases where a dirty objective caused gradients in the field of view. Cleaning the objective resolved the flat field correction issues.
  • Camera Calibration
    A common cause of flat field problems is lack of or incorrect camera calibration. Sometimes, re-calibrating the objective camera solves the problem.
  • Type of Glass of the Slide
    We have found a few prepared slides that were especially bad at negatively affecting the color of the objective image (either through attenuation or impurities in the slide).


The first thing to check is that your scans use an objective filter that includes flat field correction. In general, flat field correction should always be applied to the objective camera.

If using an objective filter with flat field correction does not eliminate the repeating pattern, you may wish to try the following suggestions:

  • Re-calibrate the objective camera. Refer to Recalibrating the Objective Camera for more information.
  • Increase illuminator brightness and scan the region again.
  • Use the Level Background Process filter when creating the Deep Zoom image. Refer to Level Background Process for more information.
  • Use the Flatten Background Process filters when creating the Deep Zoom image. Refer to Flatten Background Process for more information.

The Deep Zoom viewer incorporates an interactive image filter you can use to adjust brightness, contrast, gamma, and level clipping to improve image appearance. The following suggestions may help correct flat field issues:

  • Un-check Clip to White and reduce the White level to 230 or until the flat field artifacts disappear.
  • Increase the Brightness.
  • Increase the Contrast.
  • Increase the Gamma setting to darken the image or reduce it to lighten the image.

If you are able to successfully create a good image by adjusting the filter settings in the Deep Zoom Image Viewer, you can apply those same settings to a Deep Zoom Filter you use to create the Deep Zoom Image. You may also use those settings in your Objective Filter when scanning.

By design, the flat field correction is calculated for an illuminator level of 35. Significantly higher or lower illuminator levels may negatively affect the flat field correction depending on the slide scanned.

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